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Version 12 includes a new Layout->Column option for ListPlot which aligns multiple plots so they share a single horizontal axis. It seemed really useful at first. But data being compared in this way can have very different vertical scales.

It appears that the new capability always sets the PlotRange of all the data sets to the same value:

d1 = Table[x, .1 Sin[x], x, 0, 3 Pi, Pi/9];

d2 = Table[x, Cos[x], x, 0, 4 Pi, Pi/7];

ListLinePlot[d1, d2, PlotLayout -> "Column", 
 InterpolationOrder -> 2, GridLines -> Automatic, 
 PlotRange -> Automatic]

I have tried what seems reasonable to set the ranges separately:

ListLinePlot[d1, d2, PlotLayout -> "Column", 
 InterpolationOrder -> 2, GridLines -> Automatic, 
 PlotRange -> Automatic, Automatic, Automatic, Automatic]

ListLinePlot[d1, d2, PlotLayout -> "Column", 
 InterpolationOrder -> 2, GridLines -> Automatic, 
 PlotRange -> Automatic, -.1, .1, Automatic, -1, 1]

But neither of these work. The first gives the same result, and the second throws an error. Does anyone have any insight into this?

EDIT:

Thank you @Szabolcs. Your solution not only solves the range problem, but permits differing scaling functions. (A cross section of a biased semiconductor junction may want to plot potentials from 0 to 10 volts, but also carrier concentrations from 0 to 1E18 on a log scale.)

d3 = Table[x, Exp[10 Cos[x]], x, 0, 4 Pi, Pi/100];
GraphicsColumn[
 
 ListLinePlot[d1, InterpolationOrder -> 2, GridLines -> Automatic, 
 PlotRange -> 0, 4 Pi, Automatic, Frame -> True, 
 FrameTicks -> Automatic, None, None, None,
 FrameLabel -> None, "Linear"],
 ListLinePlot[d3, InterpolationOrder -> 2, GridLines -> Automatic, 
 PlotRange -> 0, 4 Pi, All, Frame -> True, FrameLabel -> "Log", 
 ScalingFunctions -> "Log"]
 
 ]

There is another new feature in M12.0: GraphicsColumn will now align the frames.

You can use this:

d1 = Table[x, .1 Sin[x], x, 0, 3 Pi, Pi/9];
d2 = Table[x, Cos[x], x, 0, 4 Pi, Pi/7];

GraphicsColumn[
 ListLinePlot[#, InterpolationOrder -> 2, GridLines -> Automatic, 
 PlotRange -> 0, 4 Pi, Automatic, Frame -> True] & /@ d1, d2
]

While I did need to set the horizontal range explicitly (so that they match), I did not need to fuss with the ImagePadding to ensure that the frames line up. This saves a lot of work.

Here's what the same looks like in M11.3:

The grids and frames are not quite aligned.