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Knowing Feature Importance from Sparse Matrix



The Next CEO of Stack Overflow
2019 Community Moderator ElectionFeature selection using feature importances in random forests with scikit-learnFeature Importance and Partial Dependence plots seem to disagree?XGBoost Feature importance - Gain and Cover are high but Frequency is lowGridsearch XGBoost for ensemble. Do i include first-level prediction matrix of base learners in train set?XGBoost: Quantifying Feature ImportancesHow to combine scipy sparse csr matrix to pandas dataframe. | Combining text feature with numerical featuresFeature matrix for email classification:Dealing with correlated features when calculating permutation importance










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I was working with a dataset which had a textual column as well as numerical columns, so I used tfidf for textual column and created a sparse matrix, similarly for the numerical features I created a sparse matrix using scipy.sparse.csr_matrix and combined them with the text sparse features.



Then I'm feeding the algorithm to a gradient boosting model and doing the rest of the training and prediction. However I want to know, is there any way I can plot the feature importance, of this sparse matrix and will be able to know the important feature column names?










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    $begingroup$


    I was working with a dataset which had a textual column as well as numerical columns, so I used tfidf for textual column and created a sparse matrix, similarly for the numerical features I created a sparse matrix using scipy.sparse.csr_matrix and combined them with the text sparse features.



    Then I'm feeding the algorithm to a gradient boosting model and doing the rest of the training and prediction. However I want to know, is there any way I can plot the feature importance, of this sparse matrix and will be able to know the important feature column names?










    share|improve this question









    $endgroup$




    bumped to the homepage by Community 2 mins ago


    This question has answers that may be good or bad; the system has marked it active so that they can be reviewed.

















      0












      0








      0





      $begingroup$


      I was working with a dataset which had a textual column as well as numerical columns, so I used tfidf for textual column and created a sparse matrix, similarly for the numerical features I created a sparse matrix using scipy.sparse.csr_matrix and combined them with the text sparse features.



      Then I'm feeding the algorithm to a gradient boosting model and doing the rest of the training and prediction. However I want to know, is there any way I can plot the feature importance, of this sparse matrix and will be able to know the important feature column names?










      share|improve this question









      $endgroup$




      I was working with a dataset which had a textual column as well as numerical columns, so I used tfidf for textual column and created a sparse matrix, similarly for the numerical features I created a sparse matrix using scipy.sparse.csr_matrix and combined them with the text sparse features.



      Then I'm feeding the algorithm to a gradient boosting model and doing the rest of the training and prediction. However I want to know, is there any way I can plot the feature importance, of this sparse matrix and will be able to know the important feature column names?







      machine-learning python nlp feature-selection






      share|improve this question













      share|improve this question











      share|improve this question




      share|improve this question










      asked Jan 20 at 11:48









      Debadri DuttaDebadri Dutta

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      348





      bumped to the homepage by Community 2 mins ago


      This question has answers that may be good or bad; the system has marked it active so that they can be reviewed.







      bumped to the homepage by Community 2 mins ago


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          $begingroup$

          You would have a map of your features from the TFIDF map.



          column_names_from_text_features = vectorizer.vocabulary_
          rev_dictionary = v:k for k,v in vectorizer.vocabulary_.items()
          column_names_from_text_features = [v for k,v in rev_dictionary.items()]


          Since you know the column names of your other features, the entire list of features you pass to XGBoost (after the scipy.hstack) could be



          all_columns = column_names_from_text_features + other columns


          (or depending on the order in which you horizontally stacked)



          Now, once you run the XGBoost Model, you can use the plot_importance function for feature importance. Your code would look something like this:



          from xgboost import XGBClassifier, plot_importance
          fig, ax = plt.subplots(figsize=(15, 8))
          plot_importance(<xgb-classifier>, max_num_features = 15, xlabel='F-score', ylabel='Features', ax=ax)
          plt.show()


          These features would be labeled fxxx, fyyy etc where xxx and yyy are the indices of the features passed to xgboost.



          Using the all_columns constructed in the first part, you could map the features to in indices in the plot encoding.






          share|improve this answer











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            0












            $begingroup$

            You would have a map of your features from the TFIDF map.



            column_names_from_text_features = vectorizer.vocabulary_
            rev_dictionary = v:k for k,v in vectorizer.vocabulary_.items()
            column_names_from_text_features = [v for k,v in rev_dictionary.items()]


            Since you know the column names of your other features, the entire list of features you pass to XGBoost (after the scipy.hstack) could be



            all_columns = column_names_from_text_features + other columns


            (or depending on the order in which you horizontally stacked)



            Now, once you run the XGBoost Model, you can use the plot_importance function for feature importance. Your code would look something like this:



            from xgboost import XGBClassifier, plot_importance
            fig, ax = plt.subplots(figsize=(15, 8))
            plot_importance(<xgb-classifier>, max_num_features = 15, xlabel='F-score', ylabel='Features', ax=ax)
            plt.show()


            These features would be labeled fxxx, fyyy etc where xxx and yyy are the indices of the features passed to xgboost.



            Using the all_columns constructed in the first part, you could map the features to in indices in the plot encoding.






            share|improve this answer











            $endgroup$

















              0












              $begingroup$

              You would have a map of your features from the TFIDF map.



              column_names_from_text_features = vectorizer.vocabulary_
              rev_dictionary = v:k for k,v in vectorizer.vocabulary_.items()
              column_names_from_text_features = [v for k,v in rev_dictionary.items()]


              Since you know the column names of your other features, the entire list of features you pass to XGBoost (after the scipy.hstack) could be



              all_columns = column_names_from_text_features + other columns


              (or depending on the order in which you horizontally stacked)



              Now, once you run the XGBoost Model, you can use the plot_importance function for feature importance. Your code would look something like this:



              from xgboost import XGBClassifier, plot_importance
              fig, ax = plt.subplots(figsize=(15, 8))
              plot_importance(<xgb-classifier>, max_num_features = 15, xlabel='F-score', ylabel='Features', ax=ax)
              plt.show()


              These features would be labeled fxxx, fyyy etc where xxx and yyy are the indices of the features passed to xgboost.



              Using the all_columns constructed in the first part, you could map the features to in indices in the plot encoding.






              share|improve this answer











              $endgroup$















                0












                0








                0





                $begingroup$

                You would have a map of your features from the TFIDF map.



                column_names_from_text_features = vectorizer.vocabulary_
                rev_dictionary = v:k for k,v in vectorizer.vocabulary_.items()
                column_names_from_text_features = [v for k,v in rev_dictionary.items()]


                Since you know the column names of your other features, the entire list of features you pass to XGBoost (after the scipy.hstack) could be



                all_columns = column_names_from_text_features + other columns


                (or depending on the order in which you horizontally stacked)



                Now, once you run the XGBoost Model, you can use the plot_importance function for feature importance. Your code would look something like this:



                from xgboost import XGBClassifier, plot_importance
                fig, ax = plt.subplots(figsize=(15, 8))
                plot_importance(<xgb-classifier>, max_num_features = 15, xlabel='F-score', ylabel='Features', ax=ax)
                plt.show()


                These features would be labeled fxxx, fyyy etc where xxx and yyy are the indices of the features passed to xgboost.



                Using the all_columns constructed in the first part, you could map the features to in indices in the plot encoding.






                share|improve this answer











                $endgroup$



                You would have a map of your features from the TFIDF map.



                column_names_from_text_features = vectorizer.vocabulary_
                rev_dictionary = v:k for k,v in vectorizer.vocabulary_.items()
                column_names_from_text_features = [v for k,v in rev_dictionary.items()]


                Since you know the column names of your other features, the entire list of features you pass to XGBoost (after the scipy.hstack) could be



                all_columns = column_names_from_text_features + other columns


                (or depending on the order in which you horizontally stacked)



                Now, once you run the XGBoost Model, you can use the plot_importance function for feature importance. Your code would look something like this:



                from xgboost import XGBClassifier, plot_importance
                fig, ax = plt.subplots(figsize=(15, 8))
                plot_importance(<xgb-classifier>, max_num_features = 15, xlabel='F-score', ylabel='Features', ax=ax)
                plt.show()


                These features would be labeled fxxx, fyyy etc where xxx and yyy are the indices of the features passed to xgboost.



                Using the all_columns constructed in the first part, you could map the features to in indices in the plot encoding.







                share|improve this answer














                share|improve this answer



                share|improve this answer








                edited Feb 28 at 21:54

























                answered Feb 28 at 21:46









                srjitsrjit

                1014




                1014



























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                    ValueError: Expected n_neighbors <= n_samples, but n_samples = 1, n_neighbors = 6 (SMOTE) The 2019 Stack Overflow Developer Survey Results Are InCan SMOTE be applied over sequence of words (sentences)?ValueError when doing validation with random forestsSMOTE and multi class oversamplingLogic behind SMOTE-NC?ValueError: Error when checking target: expected dense_1 to have shape (7,) but got array with shape (1,)SmoteBoost: Should SMOTE be ran individually for each iteration/tree in the boosting?solving multi-class imbalance classification using smote and OSSUsing SMOTE for Synthetic Data generation to improve performance on unbalanced dataproblem of entry format for a simple model in KerasSVM SMOTE fit_resample() function runs forever with no result